User guide

Table of contents

• 1. Introduction: fmralign in a nutshell
  • 1.1. Functional alignment: handling functional variability
  • 1.2. Installing fmralign
• 2. Functional alignment: handling functional variability
  • 2.1. An introduction to functional alignment
    • 2.1.1. Inter subject variability in fMRI
    • 2.1.2. Functional alignment
  • 2.2. Functional alignment pipeline
    • 2.2.1. Local functional alignment
    • 2.2.2. Alignment methods on a region
    • 2.2.3. Comparing those methods on a region of interest
• 3. Reference documentation: all fmralign functions
  • 3.1. fmralign.pairwise_alignment: Pairwise Alignment
    • 3.1.1. fmralign.pairwise_alignment.PairwiseAlignment
  • 3.2. fmralign.template_alignment: Template Alignment
    • 3.2.1. fmralign.template_alignment.TemplateAlignment
  • 3.3. fmralign.alignment_methods: Alignment Methods
    • 3.3.1. fmralign.alignment_methods.Identity
    • 3.3.2. fmralign.alignment_methods.DiagonalAlignment
    • 3.3.3. fmralign.alignment_methods.ScaledOrthogonalAlignment
    • 3.3.4. fmralign.alignment_methods.RidgeAlignment
    • 3.3.5. fmralign.alignment_methods.Hungarian
    • 3.3.6. fmralign.alignment_methods.OptimalTransportAlignment